Preheat the oven to 375 degrees F. Line two baking sheets with parchment paper and set aside.
In a large bowl, whisk the flour, kosher salt, cinnamon, and baking soda together. Set aside.
In the bowl of a stand mixer, on medium speed, cream the brown butter and sugars together until light and fluffy.
Add the vanilla and bourbon and beat until combined.
Add in the eggs, one at a time, beating until they are totally combined.
A little at a time, add the flour. Mix until the flour has just disappeared.
Add the chocolate and pecans. Mix to distribute throughout the dough.
Using a cookie scoop, portion the cookie dough out onto the prepared baking sheets. Press pecan halves and chopped chocolate into the top of the cookie dough, if desired.
Bake 9-10 minutes, or until golden brown at the edges but still soft in the middle. Sprinkle with sea salt.
Allow the cookies to cool on the baking sheets for 5 minutes before removing them to a wire rack to finish cooling completely.